2016 :
Boudinot P, Langevin C, Secombes CJ, Levraud JP. The Peculiar Characteristics of Fish Type I Interferons. Viruses. 2016 Nov 2;8(11). pii: E298. Review. PubMed PMID: 27827855; PubMed Central PMCID: PMC5127012.
Langevin C, Boudinot P. Suivi des infections virales en temps réel : apport du modèle poisson zèbre pour visualiser et comprendre les relations hôtes/pathogens. Virologie (20-6), Nov-Déc 2016
Mondot S, Boudinot P, Lantz O. MAIT, MR1, microbes and riboflavin: a paradigmfor the co-evolution of invariant TCRs and restricting MHCI-like molecules?Immunogenetics. 2016 Aug;68(8):537-48. doi: 10.1007/s00251-016-0927-9. Epub 2016 Jul 8. Review. PubMed PMID: 27393664.
Dehler CE, Boudinot P, Martin SA, Collet B. Development of an EfficientGenome Editing Method by CRISPR/Cas9 in a Fish Cell Line. Mar Biotechnol (NY).2016 Aug;18(4):449-52. doi: 10.1007/s10126-016-9708-6. Epub 2016 May 28. PubMedPMID: 27236514; PubMed Central PMCID: PMC5007268.
Kieback E, Hilgenberg E, Stervbo U, Lampropoulou V, Shen P, Bunse M, JaimesY, Boudinot P, Radbruch A, Klemm U, Kühl AA, Liblau R, Hoevelmeyer N, AndertonSM, Uckert W, Fillatreau S. Thymus-Derived Regulatory T Cells Are PositivelySelected on Natural Self-Antigen through Cognate Interactions of High Functional Avidity. Immunity. 2016 May 17;44(5):1114-26. doi: 10.1016/j.immuni.2016.04.018. PubMed PMID: 27192577.
Takizawa F, Magadan S, Parra D, Xu Z, Korytář T, Boudinot P, Sunyer JO. NovelTeleost CD4-Bearing Cell Populations Provide Insights into the EvolutionaryOrigins and Primordial Roles of CD4+ Lymphocytes and CD4+ Macrophages. J Immunol.2016 Jun 1;196(11):4522-35. doi: 10.4049/jimmunol.1600222. Epub 2016 May 4.PubMed PMID: 27183628; PubMed Central PMCID: PMC5100900.
Boudinot P, Mondot S, Jouneau L, Teyton L, Lefranc MP, Lantz O. Restricting non classical MHC genes coevolve with TRAV genes used by innate-like T cells inmammals. Proc Natl Acad Sci U S A. 2016 May 24;113(21):E2983-92. doi:10.1073/pnas.1600674113. Epub 2016 May 11. PubMed PMID: 27170188; PubMed Central PMCID: PMC4889381.
Alzaid A, Castro R, Wang T, Secombes CJ, Boudinot P, Macqueen DJ, Martin SA. Cross Talk Between Growth and Immunity: Coupling of the IGF Axis to ConservedCytokine Pathways in Rainbow Trout. Endocrinology. 2016 May;157(5):1942-55. doi: 10.1210/en.2015-2024. Epub 2016 Apr 1. PubMed PMID: 27035654.
Castro R, Jouneau L, Tacchi L, Macqueen DJ, Alzaid A, Secombes CJ, Martin SA,Boudinot P. Corrigendum: Disparate developmental patterns of immune responses to bacterial and viral infections in fish. Sci Rep. 2016 Jan 27;6:18524. doi:10.1038/srep18524. PubMed PMID: 26813382; PubMed Central PMCID: PMC4728742.
Aleksejeva E, Houel A, Briolat V, Levraud JP, Langevin C, Boudinot P. Zebrafish Plzf transcription factors enhance early type I IFN response induced bytwo non-enveloped RNA viruses. Dev Comp Immunol. 2016 Apr;57:48-56. doi:10.1016/j.dci.2015.12.016. Epub 2015 Dec 21. PubMed PMID: 26719025.
2015 :
Magadan S, Sunyer OJ, Boudinot P. Unique Features of Fish Immune Repertoires: Particularities of Adaptive Immunity Within the Largest Group of Vertebrates. Results Probl Cell Differ. 2015;57:235-64. doi: 10.1007/978-3-319-20819-0_10.Review. PubMed PMID: 26537384; PubMed Central PMCID: PMC5124013.
Castro R, Jouneau L, Tacchi L, Macqueen DJ, Alzaid A, Secombes CJ, Martin SA,Boudinot P. Disparate developmental patterns of immune responses to bacterial andviral infections in fish. Sci Rep. 2015 Oct 21;5:15458. doi: 10.1038/srep15458.Erratum in: Sci Rep. 2016;6:18524. PubMed PMID: 26487553; PubMed Central PMCID:PMC4614352.
Marillet S, Boudinot P, Cazals F. High-resolution crystal structures leverageprotein binding affinity predictions. Proteins. 2016 Jan;84(1):9-20. doi:10.1002/prot.24946. Epub 2015 Nov 23. PubMed PMID: 26471944.
Vu Manh TP, Elhmouzi-Younes J, Urien C, Ruscanu S, Jouneau L, Bourge M,Moroldo M, Foucras G, Salmon H, Marty H, Quéré P, Bertho N, Boudinot P, Dalod M, Schwartz-Cornil I. Defining Mononuclear Phagocyte Subset Homology Across Several Distant Warm-Blooded Vertebrates Through Comparative Transcriptomics. FrontImmunol. 2015 Jun 19;6:299. doi: 10.3389/fimmu.2015.00299. eCollection 2015.Erratum in: Front Immunol. 2016;7:143. PubMed PMID: 26150816; PubMed CentralPMCID: PMC4473062.
Rochat T, Delumeau O, Figueroa-Bossi N, Noirot P, Bossi L, Dervyn E, BoulocP. Tracking the Elusive Function of Bacillus subtilis Hfq. PLoS One. 2015 Apr27;10(4):e0124977. doi: 10.1371/journal.pone.0124977. eCollection 2015. PubMedPMID: 25915524; PubMed Central PMCID: PMC4410918.
Gómez E, Álvarez B, Duchaud E, Guijarro JA. Development of a markerlessdeletion system for the fish-pathogenic bacterium Flavobacterium psychrophilum. PLoS One. 2015 Feb 18;10(2):e0117969. doi: 10.1371/journal.pone.0117969.eCollection 2015. PubMed PMID: 25692569; PubMed Central PMCID: PMC4333118.
de Oliveira S, Boudinot P, Calado Â, Mulero V. Duox1-derived H2O2 modulatesCxcl8 expression and neutrophil recruitment via JNK/c-JUN/AP-1 signaling andchromatin modifications. J Immunol. 2015 Feb 15;194(4):1523-33. doi:10.4049/jimmunol.1402386. Epub 2015 Jan 12. PubMed PMID: 25582859.
2014 :
Suurväli J, Jouneau L, Thépot D, Grusea S, Pontarotti P, Du Pasquier L,Rüütel Boudinot S, Boudinot P. The proto-MHC of placozoans, a region specialized in cellular stress and ubiquitination/proteasome pathways. J Immunol. 2014 Sep15;193(6):2891-901. doi: 10.4049/jimmunol.1401177. Epub 2014 Aug 11. PubMed PMID:25114105.
Zou J, Gorgoglione B, Taylor NG, Summathed T, Lee PT, Panigrahi A, Genet C,Chen YM, Chen TY, Ul Hassan M, Mughal SM, Boudinot P, Secombes CJ. Salmonids havean extraordinary complex type I IFN system: characterization of the IFN locus in rainbow trout oncorhynchus mykiss reveals two novel IFN subgroups. J Immunol.2014 Sep 1;193(5):2273-86. doi: 10.4049/jimmunol.1301796. Epub 2014 Jul 30.PubMed PMID: 25080482.
Habib C, Houel A, Lunazzi A, Bernardet JF, Olsen AB, Nilsen H, Toranzo AE,Castro N, Nicolas P, Duchaud E. Multilocus sequence analysis of the marinebacterial genus Tenacibaculum suggests parallel evolution of fish pathogenicityand endemic colonization of aquaculture systems. Appl Environ Microbiol. 2014Sep;80(17):5503-14. doi: 10.1128/AEM.01177-14. Epub 2014 Jun 27. PubMed PMID:24973065; PubMed Central PMCID: PMC4136090.
Levraud JP, Palha N, Langevin C, Boudinot P. Through the looking glass:witnessing host-virus interplay in zebrafish. Trends Microbiol. 2014Sep;22(9):490-7. doi: 10.1016/j.tim.2014.04.014. Epub 2014 May 25. PubMed PMID:24865811.
Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P, SchwartzO, Spaink HP, Levraud JP, Boudinot P. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulatedgenes. J Immunol. 2014 May 1;192(9):4328-41. doi: 10.4049/jimmunol.1302611. Epub 2014 Mar 28. PubMed PMID: 24683187.
Avendaño-Herrera R, Houel A, Irgang R, Bernardet JF, Godoy M, Nicolas P,Duchaud E. Introduction, expansion and coexistence of epidemic Flavobacteriumpsychrophilum lineages in Chilean fish farms. Vet Microbiol. 2014 Jun4;170(3-4):298-306. doi: 10.1016/j.vetmic.2014.02.009. Epub 2014 Feb 16. PubMedPMID: 24636160.
Shen P, Roch T, Lampropoulou V, O'Connor RA, Stervbo U, Hilgenberg E, Ries S,Dang VD, Jaimes Y, Daridon C, Li R, Jouneau L, Boudinot P, Wilantri S, Sakwa I,Miyazaki Y, Leech MD, McPherson RC, Wirtz S, Neurath M, Hoehlig K, Meinl E,Grützkau A, Grün JR, Horn K, Kühl AA, Dörner T, Bar-Or A, Kaufmann SHE, Anderton SM, Fillatreau S. IL-35-producing B cells are critical regulators of immunityduring autoimmune and infectious diseases. Nature. 2014 Mar 20;507(7492):366-370.doi: 10.1038/nature12979. Epub 2014 Feb 23. PubMed PMID: 24572363; PubMed CentralPMCID: PMC4260166.
Nilsen H, Sundell K, Duchaud E, Nicolas P, Dalsgaard I, Madsen L, Aspán A,Jansson E, Colquhoun DJ, Wiklund T. Multilocus sequence typing identifiesepidemic clones of Flavobacterium psychrophilum in Nordic countries. Appl EnvironMicrobiol. 2014 May;80(9):2728-36. doi: 10.1128/AEM.04233-13. Epub 2014 Feb 21.PubMed PMID: 24561585; PubMed Central PMCID: PMC3993282.
Boudinot P, Zou J, Ota T, Buonocore F, Scapigliati G, Canapa A, Cannon J,Litman G, Hansen JD. A tetrapod-like repertoire of innate immune receptors andeffectors for coelacanths. J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):415-37.doi: 10.1002/jez.b.22559. Epub 2014 Jan 30. PubMed PMID: 24482296.
2013 :
Six A, Mariotti-Ferrandiz ME, Chaara W, Magadan S, Pham HP, Lefranc MP, Mora T, Thomas-Vaslin V, Walczak AM, Boudinot P. The past, present, and future ofimmune repertoire biology - the rise of next-generation repertoire analysis. Front Immunol. 2013 Nov 27;4:413. doi: 10.3389/fimmu.2013.00413. Review. PubMedPMID: 24348479; PubMed Central PMCID: PMC3841818.
Langevin C, Aleksejeva E, Passoni G, Palha N, Levraud JP, Boudinot P. Theantiviral innate immune response in fish: evolution and conservation of the IFNsystem. J Mol Biol. 2013 Dec 13;425(24):4904-20. doi: 10.1016/j.jmb.2013.09.033. Epub 2013 Sep 27. Review. PubMed PMID: 24075867.
Mostowy S, Boucontet L, Mazon Moya MJ, Sirianni A, Boudinot P, Hollinshead M,Cossart P, Herbomel P, Levraud JP, Colucci-Guyon E. The zebrafish as a new model for the in vivo study of Shigella flexneri interaction with phagocytes andbacterial autophagy. PLoS Pathog. 2013;9(9):e1003588. doi:10.1371/journal.ppat.1003588. Epub 2013 Sep 5. PubMed PMID: 24039575; PubMedCentral PMCID: PMC3764221.
Barbier P, Lunazzi A, Fujiwara-Nagata E, Avendaño-Herrera R, Bernardet JF,Touchon M, Duchaud E. From the Flavobacterium genus to the phylum Bacteroidetes: genomic analysis of dnd gene clusters. FEMS Microbiol Lett. 2013Nov;348(1):26-35. doi: 10.1111/1574-6968.12239. Epub 2013 Sep 6. PubMed PMID:23965156.
Gibrat JF, Mariadassou M, Boudinot P, Delmas B. Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities withother double-stranded RNA and positive strand RNA viruses using robuststructure-based multiple sequence alignments and advanced phylogenetic methods. BMC Evol Biol. 2013 Jul 17;13:154. doi: 10.1186/1471-2148-13-154. PubMed PMID:23865988; PubMed Central PMCID: PMC3724706.
Langevin C, van der Aa LM, Houel A, Torhy C, Briolat V, Lunazzi A, HarmacheA, Bremont M, Levraud JP, Boudinot P. Zebrafish ISG15 exerts a strong antiviralactivity against RNA and DNA viruses and regulates the interferon response. JVirol. 2013 Sep;87(18):10025-36. doi: 10.1128/JVI.01294-12. Epub 2013 Jul 3.PubMed PMID: 23824820; PubMed Central PMCID: PMC3753986.
Fujiwara-Nagata E, Chantry-Darmon C, Bernardet JF, Eguchi M, Duchaud E,Nicolas P. Population structure of the fish pathogen Flavobacterium psychrophilumat whole-country and model river levels in Japan. Vet Res. 2013 May 17;44:34.doi: 10.1186/1297-9716-44-34. PubMed PMID: 23682575; PubMed Central PMCID:PMC3660162.
Rochat T, Bouloc P, Repoila F. Gene expression control by selective RNAprocessing and stabilization in bacteria. FEMS Microbiol Lett. 2013Jul;344(2):104-13. doi: 10.1111/1574-6968.12162. Epub 2013 May 13. Review. PubMedPMID: 23617839.
Verrier ER, Ehanno A, Biacchesi S, Le Guillou S, Dechamp N, Boudinot P,Bremont M, Quillet E. Lack of correlation between the resistances to tworhabdovirus infections in rainbow trout. Fish Shellfish Immunol. 2013Jul;35(1):9-17. doi: 10.1016/j.fsi.2013.03.369. Epub 2013 Apr 10. PubMed PMID:23583726.
Castro R, Takizawa F, Chaara W, Lunazzi A, Dang TH, Koellner B, Quillet E,Six A, Fischer U, Boudinot P. Contrasted TCRβ diversity of CD8+ and CD8- T cells in rainbow trout. PLoS One. 2013;8(4):e60175. doi: 10.1371/journal.pone.0060175. Epub 2013 Apr 2. PubMed PMID: 23565199; PubMed Central PMCID: PMC3615082.
Quiniou SM, Boudinot P, Bengtén E. Comprehensive survey and genomiccharacterization of Toll-like receptors (TLRs) in channel catfish, Ictaluruspunctatus: identification of novel fish TLRs. Immunogenetics. 2013Jul;65(7):511-30. doi: 10.1007/s00251-013-0694-9. Epub 2013 Apr 5. PubMed PMID:23558557.
Fillatreau S, Six A, Magadan S, Castro R, Sunyer JO, Boudinot P. Theastonishing diversity of Ig classes and B cell repertoires in teleost fish. FrontImmunol. 2013 Feb 13;4:28. doi: 10.3389/fimmu.2013.00028. eCollection 2013.PubMed PMID: 23408183; PubMed Central PMCID: PMC3570791.
Verrier ER, Dorson M, Mauger S, Torhy C, Ciobotaru C, Hervet C, Dechamp N,Genet C, Boudinot P, Quillet E. Resistance to a rhabdovirus (VHSV) in rainbowtrout: identification of a major QTL related to innate mechanisms. PLoS One.2013;8(2):e55302. doi: 10.1371/journal.pone.0055302. Epub 2013 Feb 4. PubMedPMID: 23390526; PubMed Central PMCID: PMC3563530.
Castro R, Jouneau L, Pham HP, Bouchez O, Giudicelli V, Lefranc MP, Quillet E,Benmansour A, Cazals F, Six A, Fillatreau S, Sunyer O, Boudinot P. Teleost fishmount complex clonal IgM and IgT responses in spleen upon systemic viralinfection. PLoS Pathog. 2013 Jan;9(1):e1003098. doi:10.1371/journal.ppat.1003098. Epub 2013 Jan 10. PubMed PMID: 23326228; PubMedCentral PMCID: PMC3542120.
2012 :
Sarris M, Masson JB, Maurin D, Van der Aa LM, Boudinot P, Lortat-Jacob H,Herbomel P. Inflammatory chemokines direct and restrict leukocyte migrationwithin live tissues as glycan-bound gradients. Curr Biol. 2012 Dec18;22(24):2375-82. doi: 10.1016/j.cub.2012.11.018. Epub 2012 Dec 6. PubMed PMID: 23219724.
Buonocore F, Castro R, Randelli E, Lefranc MP, Six A, Kuhl H, Reinhardt R,Facchiano A, Boudinot P, Scapigliati G. Diversity, molecular characterization andexpression of T cell receptor γ in a teleost fish, the sea bass (Dicentrarchuslabrax, L). PLoS One. 2012;7(10):e47957. doi: 10.1371/journal.pone.0047957. Epub 2012 Oct 25. PubMed PMID: 23133531; PubMed Central PMCID: PMC3485050.
Suurväli J, Robert J, Boudinot P, Rüütel Boudinot S. R4 regulators of Gprotein signaling (RGS) identify an ancient MHC-linked synteny group.Immunogenetics. 2013 Feb;65(2):145-56. doi: 10.1007/s00251-012-0661-x. Epub 2012 Nov 6. PubMed PMID: 23129146; PubMed Central PMCID: PMC3545050.
Rochat T, Nicolas P, Delumeau O, Rabatinová A, Korelusová J, Leduc A,Bessières P, Dervyn E, Krásny L, Noirot P. Genome-wide identification of genesdirectly regulated by the pleiotropic transcription factor Spx in Bacillussubtilis. Nucleic Acids Res. 2012 Oct;40(19):9571-83. doi: 10.1093/nar/gks755.Epub 2012 Aug 16. PubMed PMID: 22904090; PubMed Central PMCID: PMC3479203.
Siekoula-Nguedia C, Blanc G, Duchaud E, Calvez S. Genetic diversity ofFlavobacterium psychrophilum isolated from rainbow trout in France: predominance of a clonal complex. Vet Microbiol. 2012 Dec 28;161(1-2):169-78. doi:10.1016/j.vetmic.2012.07.022. Epub 2012 Jul 20. PubMed PMID: 22871298.
Langevin C, Blanco M, Martin SA, Jouneau L, Bernardet JF, Houel A, Lunazzi A,Duchaud E, Michel C, Quillet E, Boudinot P. Transcriptional responses ofresistant and susceptible fish clones to the bacterial pathogen Flavobacteriumpsychrophilum. PLoS One. 2012;7(6):e39126. doi: 10.1371/journal.pone.0039126.Epub 2012 Jun 13. PubMed PMID: 22720048; PubMed Central PMCID: PMC3374740.
van der Aa LM, Chadzinska M, Derks W, Scheer M, Levraud JP, Boudinot P, Lidy Verburg-van Kemenade BM. Diversification of IFNγ-inducible CXCb chemokines incyprinid fish. Dev Comp Immunol. 2012 Oct;38(2):243-53. doi:10.1016/j.dci.2012.05.005. Epub 2012 Jun 15. PubMed PMID: 22705555.
Barbier P, Houel A, Loux V, Poulain J, Bernardet JF, Touchon M, Duchaud E. Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated fromwarm spring water. J Bacteriol. 2012 Jun;194(11):3024-5. doi:10.1128/JB.00420-12. PubMed PMID: 22582381; PubMed Central PMCID: PMC3370609.
Verrier ER, Langevin C, Tohry C, Houel A, Ducrocq V, Benmansour A, Quillet E,Boudinot P. Genetic resistance to rhabdovirus infection in teleost fish isparalleled to the derived cell resistance status. PLoS One. 2012;7(4):e33935.doi: 10.1371/journal.pone.0033935. Epub 2012 Apr 13. PubMed PMID: 22514610;PubMed Central PMCID: PMC3326022.
